Basic Information
VIS ID
TVIS44028945
Fusion event
HTLV-1-RAP2C-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q26.2
Reference genome
NCBI36/hg18
Start
131323246/132361537 (Hg38)
End
131323246/132361537 (Hg38)
Orient
-
Location type
Intronic
Target gene
RAP2C-AS1
Nearest miRNA
hsa-let-7f-2/Upstream/10990484; hsa-mir-105-1/Downstream/1807841;
Nearest TSS
ENST00000429181/Upstream/142057; ENST00000455269/Downstream/25265;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/143030, chrX-CpG: 120/Downstream/127579
Upstream sequence
gaggctgaggcaggagaatcgctggaacctggaaggcagaggctgcggtgagccgagattgtgccactgcactctaccctgggtgacagagcaagactct
Downstream sequence
gtcaaaaaaacaaaaaaacaaaaaaaaaaacaaaaAAGGATACCCTTAGGGTATATGTACTTGGGTTGTCTCTGTATAGAGGGCACAAGTACACTTTCAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate