Basic Information
VIS ID
TVIS44028972
Fusion event
HTLV-1-LOC112268156 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
NCBI36/hg18
Start
94375232/96030999 (Hg38)
End
94375232/96030999 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112268156
Nearest miRNA
hsa-mir-10393/Upstream/3126524; hsa-mir-1302-10/Downstream/302262;
Nearest TSS
ENST00000557528/Upstream/40417; ENST00000560176/Downstream/33358;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/703906, chr15-CpG: 151/Downstream/290653
Upstream sequence
TTATGGAACGGAACCCCAAGGTATATTCCTAAGTGTCCCATATCATGGAGGTAACAGAATTTTTGGCTGATCATTTGAAAGAATGGCTTACGTGAAGGAG
Downstream sequence
AAGATGGAAACAGGACATGGTAGCTGGGAAGTAAATCCAGTAATGCAGATTAAAAAACAAACAAACAAACAAAAACCATGAGCTAGGGTAACATATGCAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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