Basic Information
VIS ID
TVIS44028979
Fusion event
HTLV-1-LINC02755 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
NCBI36/hg18
Start
29352756/29374633 (Hg38)
End
29352756/29374633 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02755
Nearest miRNA
hsa-mir-210/Upstream/897085; hsa-let-7a-2/Downstream/5567204;
Nearest TSS
ENST00000527297/Upstream/24284; ENST00000527727/Downstream/70854;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1263959, chr11-CpG: 25/Downstream/641492
Upstream sequence
tagctactttgaagtcctttttttttgttgtggttaaatccaacatctgacagacatctggtgatttctgttacctgctatcattctgtgtatgttatac
Downstream sequence
tttcccatttctttgcatgcctcataaatgttgttagaaactgaacatttgggataacatgttacagcaattctgaatattagtccccttcccccagagc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate