VISDB Viral Integration Site DataBase

VIS ID

TVIS44028987

Fusion event

HTLV-1-ATXN1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr6

Cytoband

p22.3

Reference genome

Start

End

16768560/16660350 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-130a-3p ; hsa-mir-125b-5p ; hsa-mir-590-3p ; hsa-mir-335-5p ; hsa-mir-340-5p ; hsa-mir-186-5p ; hsa-mir-125a-5p ; hsa-mir-221-3p ; hsa-mir-96-5p ; hsa-mir-93-5p ; hsa-mir-32-5p ; hsa-mir-877-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-627-3p ; hsa-mir-1228-3p ; hsa-mir-140-3p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-657 ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-4503 ; hsa-mir-6792-5p ; hsa-mir-4736 ; hsa-mir-6740-5p ; hsa-mir-6808-3p ; hsa-mir-1277-5p ; hsa-mir-4768-5p ; hsa-mir-6515-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4796-3p ; hsa-mir-4795-3p ; hsa-mir-515-5p ; hsa-mir-519e-5p ; hsa-mir-20a-5p ; hsa-mir-218-5p ; hsa-mir-106b-5p ; hsa-mir-433-3p ; hsa-mir-1206 ; hsa-mir-7154-5p ; hsa-mir-549a ; hsa-mir-494-3p ; hsa-mir-8060 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-5692a ; hsa-mir-8056 ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-548g-3p ; hsa-mir-16-1-3p ; hsa-mir-144-3p ; hsa-mir-595 ; hsa-mir-548ah-5p ; hsa-mir-5590-3p ; hsa-mir-3609 ; hsa-mir-142-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6883-3p ; hsa-mir-4653-3p ; hsa-mir-1203 ; hsa-mir-454-5p ; hsa-mir-6736-3p ; hsa-mir-382-5p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-758-3p ; hsa-mir-4536-5p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-3119 ; hsa-mir-576-3p ; hsa-mir-6885-3p ; hsa-mir-491-3p ; hsa-mir-4423-3p ; hsa-mir-361-3p ; hsa-mir-4729 ; hsa-mir-1910-5p ; hsa-mir-455-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-6077 ; hsa-mir-146b-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-4468 ; hsa-mir-4699-5p ; hsa-mir-3688-3p ; hsa-mir-8076 ; hsa-mir-371b-3p ; hsa-mir-302f ; hsa-mir-874-3p ; hsa-mir-7-5p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-1247-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-630 ; hsa-mir-942-5p ; hsa-mir-1236-3p ; hsa-mir-136-5p ; hsa-mir-6832-3p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-3691/Upstream/518726; hsa-mir-10398/Downstream/1911434;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/332018, chr6-CpG: 238/Downstream/99597

Upstream sequence

GAAGTTATCATAAGCAAAGATAAGGCCAAAAGCCCAAAAAGCAGAAGAGAAAGCACAGGGGCCTAGGGCATTCACAGATATGCCTGCATATGTGAAAGTT

Downstream sequence

GGCTATATTTTAAAAAGGATCTCACTCCAGAGGGTTTTCCAATTTGATAGACATTTTGGTGAAAATTTTCTGAACAGTTATAAGCAACAGCAGCAGCAGC