Basic Information
VIS ID
TVIS44028988
Fusion event
HTLV-1-KCND2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q31.31
Reference genome
NCBI36/hg18
Start
119943378/120516088 (Hg38)
End
119943378/120516088 (Hg38)
Orient
-
Location type
Intronic
Target gene
KCND2
Nearest miRNA
hsa-mir-10525/Upstream/3495769; hsa-mir-10399/Downstream/6542000;
Nearest TSS
ENST00000635602/Upstream/242420; ENST00000473190/Downstream/224756;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/240657, chr7-CpG: 83/Downstream/340978
Upstream sequence
ACCTCTTCTCAGCACTTTCTTTCTTCTGATGTAGTCTTCTGTATTATATTATCTCCCATCAGTCTCTAAGATCCTTGAAAATAATATCTTGGTAGGATTC
Downstream sequence
ATATTTTGATCTTCCAAATTTCAAGTAATACTGTTTAATAAGGGAATATATGAATTCCACCAAATTAAAGACTTTTCCTTTTCAATTACAAGTACTGAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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