Basic Information
VIS ID
TVIS44028989
Fusion event
HTLV-1-CTB-30L5.1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
106139616/106711934 (Hg38)
End
106139616/106711934 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
CTB-30L5.1
Nearest miRNA
hsa-mir-10525/Upstream/4240403; hsa-mir-10399/Downstream/7941411;
Nearest TSS
ENST00000635602/Upstream/50938; ENST00000470135/Downstream/63077;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/50807, chr7-CpG: 58/Downstream/155678
Upstream sequence
cggatcaattcaacaagaagagctaactatcctaaatatatatgcacccagtacaggagaacccagattcataaagcaagtcattagagacctacaaaga
Downstream sequence
gacttagactcccacacaataataatgggagaatttaacaccccactgtcaatgttagatagatcaacaatacagaaggttaacaaggatagccaggact
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate