Basic Information
VIS ID
TVIS44028991
Fusion event
HTLV-1-C8orf34 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
69498718/68423929 (Hg38)
End
69498718/68423929 (Hg38)
Orient
-
Location type
Intronic
Target gene
C8orf34
Nearest miRNA
hsa-mir-124-1/Upstream/4044672; hsa-mir-10400/Downstream/6124614;
Nearest TSS
ENST00000518652/Upstream/92438; ENST00000518515/Downstream/13984;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/92361, chr8-CpG: 224/Downstream/1407934
Upstream sequence
aggaatctcttcacagggcagcaggaaacagaatgagtggaaacaggggcaatgccagatgcttttaaaaccatcagatcatgtgaaactcattcagtat
Downstream sequence
cacaagaatagcagggaggaaactgcccccatgatctgattacctccacctagtcctgcccttgacacatggggtttataattcaaggtgagatttgggt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate