Basic Information
VIS ID
TVIS44028992
Fusion event
HTLV-1-IL1RAPL2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
104192146/105060808 (Hg38)
End
104192146/105060808 (Hg38)
Orient
-
Location type
Intronic
Target gene
IL1RAPL2
Nearest miRNA
hsa-let-7f-2/Upstream/9997582; hsa-mir-105-1/Downstream/1579006;
Nearest TSS
ENST00000429181/Upstream/494493; ENST00000485671/Downstream/159866;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/493446, chrX-CpG: 62/Downstream/761533
Upstream sequence
aatattatttcctcttaaatgttacttttctgttcacatgttggatttctttatgatttaatcttggtaggttgtatgtgtctagaaatgtctcattttc
Downstream sequence
ttctagattttttaatttattagcatatagttgctcatagtggccccaatgttcctttaaatttctgcagtatcagttgtaatgtcttctttttaaattc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate