Basic Information
VIS ID
TVIS44029003
Fusion event
HTLV-1-GRIA3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
NCBI36/hg18
Start
122421984/123460452 (Hg38)
End
122421984/123460452 (Hg38)
Orient
-
Location type
Intronic
Target gene
GRIA3
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7f-2/Upstream/2089399; hsa-mir-105-1/Downstream/10708926;
Nearest TSS
ENST00000429181/Upstream/105543; ENST00000460123/Downstream/22271;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/275155, chrX-CpG: 75/Downstream/271897
Upstream sequence
CTGGTTGGGCCAAGATGAAAAACACAAAACAGCTCTTTATAAatgcacaaaaatgcatacccactacagggttttctataatgccaaaaataatggaaat
Downstream sequence
tatctaagagcccttcaaaaggggttgggtaaataaaacatagtgtgttcgtagattgaagagctatgcagccattataaaGGAAATATGCTTATTCtag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate