Basic Information
VIS ID
TVIS44029005
Fusion event
HTLV-1-EXOC4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
NCBI36/hg18
Start
133199578/133864285 (Hg38)
End
133199578/133864285 (Hg38)
Orient
-
Location type
Intronic
Target gene
EXOC4
miRNAs that regulate target gene
hsa-mir-33a-5p ; hsa-mir-877-3p ; hsa-mir-93-3p ; hsa-mir-3200-3p
Nearest miRNA
hsa-mir-10525/Upstream/573297; hsa-mir-10399/Downstream/1342709;
Nearest TSS
ENST00000635602/Upstream/96188; ENST00000472020/Downstream/30778;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/781949, chr7-CpG: 17/Downstream/262967
Upstream sequence
TGTTTGTATGTGGAAATTGATGTTAATGAATGTCTGGATAGCATTTTACTTAATGCCTTTGTGTGTATCATGTGTacaacaactctgtgagataggttat
Downstream sequence
ttcttctatttggtagagaggaaaattatatgacttagttaatatagcacagctagcaagtggtagcccaggatctaatatccagatcttgactaactct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate