Basic Information
VIS ID
TVIS44029015
Fusion event
HTLV-1-UFL1-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
NCBI36/hg18
Start
97030561/96475964 (Hg38)
End
97030561/96475964 (Hg38)
Orient
+
Location type
Intronic
Target gene
UFL1-AS1
Nearest miRNA
hsa-mir-10398/Upstream/4954227; hsa-mir-1202/Downstream/1548567;
Nearest TSS
ENST00000381078/Upstream/459980; ENST00000461673/Downstream/45631;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/459704, chr6-CpG: 61/Downstream/45671
Upstream sequence
tttgtcttttttggtatttgtttttttgaagtctgttttaccagagactaggattgcaacccctgcttctttttgctttccatttgcttgggaaatatta
Downstream sequence
ctccatccctttattttgagcttatgtgtgtctttgcatgtgagatgggtctcctaaatacagcacacagatgggtcttgactctgtatccaatttgcca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate