Basic Information
VIS ID
TVIS44029029
Fusion event
HTLV-1-LOC105377795 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p23.2
Reference genome
NCBI36/hg18
Start
5704537/5859607 (Hg38)
End
5704537/5859607 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377795
Nearest miRNA
hsa-mir-3674/Upstream/3782967; hsa-mir-10400/Downstream/762517;
Nearest TSS
ENST00000518652/Upstream/189530; ENST00000522905/Downstream/177367;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/736183, chr8-CpG: 72/Downstream/546454
Upstream sequence
ACACTGACTCTGTGTTCAAGTTTTGTTAAATTATAATGCAGTGTTTTCTTCTTAAAATACATTTGTATTCTATTTTAAAAAGATGAAGCAAGTTGGGTGC
Downstream sequence
ATATCAAATAGTAACCAACAAAAATAAAGAATATTAAGTGATATGAGAAAATCCTATTTTTGCATGCATTTCTATTATGTCAGAAATATATGATCATAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate