Basic Information
VIS ID
TVIS44029042
Fusion event
HTLV-1-C12orf42 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
NCBI36/hg18
Start
102424724/103506816 (Hg38)
End
102424724/103506816 (Hg38)
Orient
-
Location type
Intronic
Target gene
C12orf42
Nearest miRNA
hsa-let-7i/Upstream/3316867; hsa-mir-1178/Downstream/423609;
Nearest TSS
ENST00000382841/Upstream/10806; ENST00000551174/Downstream/40978;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/10751, chr12-CpG: 87/Downstream/333679
Upstream sequence
ACAGTATAAATTCAACTAGGTTAGAAAGAAAGTACATAAAACAGGGGCTAGAAGAGGCATGCAACAAAGTGGTCTCTGGGTGATGTATCAAATACATGTT
Downstream sequence
tatatatatatttatatattatatatatatatatttatatattatatatatatatttatatattatatattaaatatatatttatatattatatatatat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate