Basic Information
VIS ID
TVIS44029044
Fusion event
HTLV-1-LOC107986859 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
NCBI36/hg18
Start
149729234/150401213 (Hg38)
End
149729234/150401213 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
LOC107986859
Nearest miRNA
hsa-mir-10399/Upstream/3023092; hsa-mir-153-2/Downstream/837208;
Nearest TSS
ENST00000635602/Upstream/511; ENST00000642087/Downstream/3273;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/3072, chr7-CpG: 111/Downstream/3605
Upstream sequence
TGGGGAGCCAGGTGAGCTTGGTGATGTTGGGGCTTCTGGAACTGCCTGCATCATCCTTGTATTTCTTTGTTAGGAGCAAGTCTGGACCTAAGAAAGATGG
Downstream sequence
TGTAGGTTCTCGGAAAATGGTTGTTTTTTGGCAAGGGACACGAGCTTCAAGTCGTCCGGTAAGGCAGTCGGCCTCATTGAGAGGGTTTGGTGTCCCACTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate