Basic Information
VIS ID
TVIS44029056
Fusion event
HTLV-1-SAMM50 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
NCBI36/hg18
Start
42710657/43983444 (Hg38)
End
42710657/43983444 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
SAMM50
Nearest miRNA
hsa-mir-1281/Upstream/2060147; hsa-let-7a-3/Downstream/1217510;
Nearest TSS
ENST00000624155/Upstream/8849; ENST00000493621/Downstream/2900;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/27662, chr22-CpG: 26/Downstream/12985
Upstream sequence
TTTTTATGTAATTAATTTTTAATTCACGCTTTTCATATTATTCAGATATGGTTGGTGAGAGTGTGACAATCCAGTTCATTAGGGAACAAGAGGAGCTCAT
Downstream sequence
ATTTAAAAATTATAAACCTAACAAGAATTCTTTTTTGGTCTGTTTCTAGTATTATAGCCCCCCTTTTTGTAATATTGGGATTATACTATTAAATAATTTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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