Basic Information
VIS ID
TVIS44029069
Fusion event
HTLV-1-C1QTNF9 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
NCBI36/hg18
Start
23794515/24322377 (Hg38)
End
23794515/24322377 (Hg38)
Orient
+
Location type
Intronic
Target gene
C1QTNF9
miRNAs that regulate target gene
hsa-mir-181a-5p ; hsa-mir-31-5p
Nearest miRNA
hsa-mir-2276/Upstream/159873; hsa-mir-1267/Downstream/15341657;
Nearest TSS
ENST00000623511/Upstream/779; ENST00000561557/Downstream/9073;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/13650, chr13-CpG: 41/Downstream/5777
Upstream sequence
tttgttacataggtaaacatgtgctgtggtggtttgctgtatctatcaacccatcacctaggtattaagccctgcatgcattagctatttgtcctggtgc
Downstream sequence
tctccctcccACTTTGCTCATTTTCTAACCTAGGTTTTAATCACCATTTTACCCAACAAATCATTGTTCGATCATTATTTGCCAGACTTGAATCTCTATG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate