Basic Information
VIS ID
TVIS44029074
Fusion event
HTLV-1-ALG5 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
NCBI36/hg18
Start
36460225/36988088 (Hg38)
End
36460225/36988088 (Hg38)
Orient
-
Location type
Intronic
Target gene
ALG5
miRNAs that regulate target gene
hsa-mir-24-3p
Nearest miRNA
hsa-mir-2276/Upstream/12825584; hsa-mir-1267/Downstream/2675946;
Nearest TSS
ENST00000623511/Upstream/20032; ENST00000488108/Downstream/10728;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/67473, chr13-CpG: 46/Downstream/11048
Upstream sequence
tgagtgggtcctttattgtggcatgttctttcacattgctgtgcctttgttcatgttccccgtctaggctccctgccctcccaacttggaggtggttaag
Downstream sequence
tcctaatcctccttaaagaccccgccgagaatttgcctcctctgggacatctgtgctgctgccctcaaaagatggtggcaccaactttttgcatgtactt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate