Basic Information
VIS ID
TVIS44029086
Fusion event
HTLV-1-TUBA4A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
NCBI36/hg18
Start
219824292/219251326 (Hg38)
End
219824292/219251326 (Hg38)
Orient
-
Location type
Intronic
Target gene
TUBA4A
Nearest miRNA
hsa-mir-10b/Upstream/192576; hsa-mir-1244-1/Downstream/42785;
Nearest TSS
ENST00000437798/Upstream/5430; ENST00000485041/Downstream/1667;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/5560, chr2-CpG: 111/Downstream/1889
Upstream sequence
AGAGCCGCTCCATCAGGAGTGAGGTGAAGCCAGAGCCAGTGCCCCCACCAAAGCTGTGGAACACCAGGAAGCCCTGAAGTCCTGTGCACTGGTCAGACTG
Downstream sequence
AAAGGCAAGAACGAGAAAGAACAGTTTAGGTAGGGGAGGGGCCTGAGGGACTCTATCACCTGGCTCCATAAAGCGTAAGATACATCAGCAGTCAGGGCAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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