VISDB Viral Integration Site DataBase

VIS ID

TVIS44029089

Fusion event

HTLV-1-BRWD1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr21

Cytoband

q22.2

Reference genome

Start

End

39581262/39287466 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-124-3p ; hsa-mir-33a-5p ; hsa-mir-106b-5p ; hsa-mir-128-3p ; hsa-mir-192-5p ; hsa-mir-15a-5p ; hsa-mir-4501 ; hsa-mir-10b-3p ; hsa-mir-96-5p ; hsa-mir-182-5p ; hsa-mir-1271-5p ; hsa-mir-548c-3p ; hsa-mir-6804-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-23c ; hsa-mir-634 ; hsa-mir-3666 ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-132-3p ; hsa-mir-212-3p ; hsa-mir-433-3p ; hsa-mir-4762-3p ; hsa-mir-3942-3p ; hsa-mir-215-5p ; hsa-mir-4256 ; hsa-mir-5100 ; hsa-mir-331-5p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-4750-3p ; hsa-mir-16-1-3p ; hsa-mir-892c-5p ; hsa-mir-4678 ; hsa-mir-593-5p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-1283 ; hsa-mir-183-5p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-146a-5p ; hsa-mir-146b-5p ; hsa-mir-2467-3p ; hsa-mir-31-3p ; hsa-mir-3678-3p ; hsa-mir-4261 ; hsa-mir-4463 ; hsa-mir-4494 ; hsa-mir-4712-3p ; hsa-mir-589-5p ; hsa-mir-7153-5p ; hsa-mir-759 ; hsa-mir-875-3p

Nearest miRNA

hsa-let-7c/Upstream/3566658; hsa-mir-3197/Downstream/159544;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/103275, chr21-CpG: 194/Downstream/24978

Upstream sequence

aatttggatttgtctgattgcttcctTGGGAGATTAGCGCCAAACATTTTTTACCTAAATAATAAGTAGgtagagaaaatgtttaactacagatacaatg

Downstream sequence

catttcatagttacaagtcaattcagattttctttttgtgtcttgtttttctctgtattaaccttcaattttcctttataaagctgcttaaaatatcctc