Basic Information
VIS ID
TVIS44029098
Fusion event
HTLV-1-LOC105370839 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
58313053/60233562 (Hg38)
End
58313053/60233562 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
LOC105370839
Nearest miRNA
hsa-mir-10393/Upstream/1062300; hsa-mir-11181/Downstream/2071096;
Nearest TSS
ENST00000557528/Upstream/115242; ENST00000501579/Downstream/117991;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/227241, chr15-CpG: 63/Downstream/163988
Upstream sequence
actgtggttcccttttgcattgtcagctcagaagctgacagcccagcatgggacccttcttcagcaactggataggacttcatgcagtgtatttCAGGAA
Downstream sequence
CCCCACTCTAAGCTCCGTTTTGCTTTCAAAATAAAAATTTggctgggtgcagtggctcacgcctgtaatcccaatactttgtgaagccaaggcaggtgga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate