Basic Information
VIS ID
TVIS44029106
Fusion event
HTLV-1-WARSP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
NCBI36/hg18
Start
58782498/59258449 (Hg38)
End
58782498/59258449 (Hg38)
Orient
+
Location type
Intronic
Target gene
WARSP1
Nearest miRNA
hsa-mir-129-2/Upstream/1617163; hsa-let-7a-2/Downstream/336628;
Nearest TSS
ENST00000527297/Upstream/45498; ENST00000313940/Downstream/25584;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/84870, chr11-CpG: 34/Downstream/302215
Upstream sequence
TCCACACAGCCTCAGTGAgcagtttggtaccaggtacaaagagcccaaaaatgttcagagctttgcctcagttttccaaatcttggaattttttccaagg
Downstream sequence
aaataatcctgaatatgtaaaagctttccacaccaagacattaaaatgataatagcaaaaagttcaaaagaaactgtataacagaggaaatgttaaatta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate