Basic Information
VIS ID
TVIS44029131
Fusion event
HTLV-1-BFAR integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
p13.12
Reference genome
NCBI36/hg18
Start
14659405/14658047 (Hg38)
End
14659405/14658047 (Hg38)
Orient
+
Location type
Intronic
Target gene
BFAR
miRNAs that regulate target gene
hsa-mir-29c-3p ; hsa-mir-103a-3p ; hsa-mir-98-5p ; hsa-mir-16-5p ; hsa-mir-92a-3p ; hsa-mir-5587-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-323a-5p ; hsa-mir-6801-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-6823-5p ; hsa-mir-34a-5p
Nearest miRNA
hsa-mir-1225/Upstream/348676; hsa-mir-11401/Downstream/243461;
Nearest TSS
ENST00000527434/Upstream/9503; ENST00000564078/Downstream/3917;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/24538, chr16-CpG: 21/Downstream/36173
Upstream sequence
cctggtcaagtaatcctcccacctcaacctcccaagtagctggggctacaggcacaggctactgaagcagctacattgcctggggaactggggtttgtca
Downstream sequence
tcttgcaccaggaaaatttaggacacagacacacaagagttgagcagaggtttaataggcaaaagtaagagaaaggaaaacagctctgtctctagcaaga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate