Basic Information
VIS ID
TVIS44029132
Fusion event
HTLV-1-LOC349160 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
NCBI36/hg18
Start
136481941/137146654 (Hg38)
End
136481941/137146654 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC349160
Nearest miRNA
hsa-mir-10525/Upstream/243360; hsa-mir-10399/Downstream/977104;
Nearest TSS
ENST00000635602/Upstream/232352; ENST00000448365/Downstream/17616;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/173081, chr7-CpG: 20/Downstream/17653
Upstream sequence
GTGATTCTTTTAAAGGTAAAAAGTTGAAGGTAACCACAGAGAAGAATTTTAACCTTATGAGTAATAATCTAAAATGGTTTTTGTATTTATGTCTAAAACG
Downstream sequence
AATGCATTGTCGGAGCAATCTGACCACGCAAATTCCTGTTACTGACGGGCAGAGCTGGGATTCCTGTTGTAAGCCTGATGTGGCTGTCTTCCTCTCCCTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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