Basic Information
VIS ID
TVIS44029136
Fusion event
HTLV-1-CHMP6 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
76588218/80999823 (Hg38)
End
76588218/80999823 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHMP6
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10226/Upstream/580330; hsa-mir-1250/Downstream/125453;
Nearest TSS
ENST00000595228/Upstream/5179; ENST00000570913/Downstream/304;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/330, chr17-CpG: 82/Downstream/3990
Upstream sequence
GGGCCAGGGGCTTTCTTGCTGAATTGACGACTCCGAGAGCCCTGACTCCCGCCTTGCCACTCACGGCTCTGTCCACTAGGGCTCAGCCCTGCTGAGAAAG
Downstream sequence
GACCTCCGATGCTTGGGAGACGCTGCTCCGGCAGGTGCAGCCCCGGAAGTTTGTCCATGGGGGTCCCCGCGGCTGGGGCTCATGGAACTGCGAGACCCGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate