Basic Information
VIS ID
TVIS44029171
Fusion event
HTLV-1-WIPF3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
NCBI36/hg18
Start
29896363/29890222 (Hg38)
End
29896363/29890222 (Hg38)
Orient
+
Location type
Intronic
Target gene
WIPF3
miRNAs that regulate target gene
hsa-mir-744-5p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-6823-5p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p
Nearest miRNA
hsa-mir-1183/Upstream/209394; hsa-mir-10399/Downstream/399572;
Nearest TSS
ENST00000635602/Upstream/55497; ENST00000422239/Downstream/78845;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/5574, chr7-CpG: 138/Downstream/98680
Upstream sequence
ctgaggcaggaggatcacatgaggccaggagtttaaggccagccttgtcaacatagcaagattccatttctacaaaataattagccaggtgtggtagtgc
Downstream sequence
acacctgtagtcccagcttcttgggagcctgaggtgggaggattgcttgagcccaggagttggaggctgcagtgagctatgattgtgccacttcactcca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate