VISDB Viral Integration Site DataBase

VIS ID

TVIS44029172

Fusion event

HTLV-1-ABHD2 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr15

Cytoband

q26.1

Reference genome

Start

End

87537993/89193758 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-484 ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-498 ; hsa-mir-519d-3p ; hsa-mir-24-3p ; hsa-mir-493-3p ; hsa-mir-3133 ; hsa-mir-33a-5p ; hsa-mir-33b-5p ; hsa-mir-449c-3p ; hsa-mir-8086 ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-4684-3p ; hsa-mir-548aw ; hsa-mir-218-5p ; hsa-mir-127-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-186-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-1264 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4533 ; hsa-mir-6828-5p ; hsa-mir-2467-3p ; hsa-mir-1827 ; hsa-mir-1252-5p ; hsa-mir-922 ; hsa-mir-6783-5p ; hsa-mir-6876-5p ; hsa-mir-6838-5p ; hsa-mir-4476 ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-6758-5p ; hsa-mir-1294 ; hsa-mir-4710 ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-3155b ; hsa-mir-4756-3p ; hsa-mir-3155a ; hsa-mir-3919 ; hsa-mir-6856-5p ; hsa-mir-1244 ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-3646 ; hsa-mir-1252-3p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4772-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-2116-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-1224-3p ; hsa-mir-5571-5p ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-561-5p ; hsa-mir-6830-5p ; hsa-mir-33a-3p ; hsa-mir-8080

Nearest miRNA

hsa-mir-10393/Upstream/581824; hsa-mir-1302-10/Downstream/132981;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/104780, chr15-CpG: 63/Downstream/50009

Upstream sequence

AAAATTCGAgactaggtgtgttggctcacacctgtaatcctagcactttgtgaggctgcaatgggaggatcgcttgaggccaggagttcaacaggagcct

Downstream sequence

gggcaatatagtaagaccctatctctacaaaaaacttaaaaattagctgggcatggggaggctgaggcaggagaatggcgtgaacccgggaggcggagct