Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene38569701385108343852866238509665385111523847171138473149385058853850675038512019385127383848558938486062384733653847371938474343384746323847604338476192384847033848485238520706
Basic Information
VIS ID
TVIS44029191
Fusion event
HTLV-1-C8orf86 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p11.22
Reference genome
NCBI36/hg18
Start
38497381/38520706 (Hg38)
End
38497381/38520706 (Hg38)
Orient
+
Location type
Intronic
Target gene
C8orf86
Nearest miRNA
hsa-mir-124-1/Upstream/8563358; hsa-mir-10400/Downstream/2750342;
Nearest TSS
ENST00000518652/Upstream/51872; ENST00000522474/Downstream/7951;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/51850, chr8-CpG: 52/Downstream/130075
Upstream sequence
AAGAGGGAAGCAAAAGATGAAAGAAATCCTGGGACCACGCAGCTTCAGAGGGCTGGATGCCACAGTCCCCAGGCTCGGGAATGAACGCCTTAGCTGGAGC
Downstream sequence
TTGGGGGCTTGGTGTCCCTGGACTACCCACACCGTAGCTCCAGGCAGGTTGCTATGCATGCTCACGTCATCATccatattcagtttcatcaattacactc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate