Basic Information
VIS ID
TVIS44029195
Fusion event
HTLV-1-WDR20 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q32.31
Reference genome
NCBI36/hg18
Start
101724658/102188568 (Hg38)
End
101724658/102188568 (Hg38)
Orient
-
Location type
Intronic
Target gene
WDR20
miRNAs that regulate target gene
hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-4537 ; hsa-mir-5586-3p
Nearest miRNA
hsa-mir-1185-1/Upstream/628146; hsa-mir-12121/Downstream/351076;
Nearest TSS
ENST00000550708/Upstream/9626; ENST00000555973/Downstream/2673;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/47928, chr14-CpG: 16/Downstream/25382
Upstream sequence
CAGACCCTTTGTGGTACTGGAAAGAAATTCCTCAAGGACCTATAGGCTCATTAGTGCCATGCTAAACTGACCCAGCTGACTCTGAATTTCAGTAGTATTG
Downstream sequence
TTCCAGAAAAAAATTCCagccaggcatggtgacttacatctgtaatcccagcactttgggaggctgagatgtgagggttcttggagcctaggagtttgat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate