Basic Information
VIS ID
TVIS44029213
Fusion event
HTLV-1-LOC101928012 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
112097204/112669913 (Hg38)
End
112097204/112669913 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928012
Nearest miRNA
hsa-mir-10525/Upstream/10198382; hsa-mir-10399/Downstream/1983432;
Nearest TSS
ENST00000635602/Upstream/47535; ENST00000495516/Downstream/108743;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/218556, chr7-CpG: 62/Downstream/120012
Upstream sequence
tgggacatcagtcttcctctgttggtgctcctggctctcaagtctttagacccagactggaatctatactattggctctcaggctctcagaccttggaac
Downstream sequence
tacatcaccagctttcctgggcctctagcttgtagattgcagattgtgaaccttctcagactccataatgcctgagcaacaacttaataaattccatcat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate