Basic Information
VIS ID
TVIS44029217
Fusion event
HTLV-1-BAGE2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
10110300/10424026 (Hg38)
End
10110300/10424026 (Hg38)
Orient
-
Location type
Intronic
Target gene
BAGE2
Nearest miRNA
hsa-mir-10396a/Upstream/1436361; hsa-let-7c/Downstream/2982358;
Nearest TSS
ENST00000624081/Upstream/81289; ENST00000612957/Downstream/97527;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/18288, chr21-CpG: 159/Downstream/97017
Upstream sequence
CAAAAATAGAATATAATGAAAACTTCATTTGAATCATTACTGAACTGCACCTACATTAATCATGATATACCTATGAAAAGATGTATAACATATACTAGTA
Downstream sequence
TGCCAAAAAAAAGTAAGGCACAAAACAGTATTTATAGTATAATTCCAtttgtttttttgttgttgttgttttttttgagacggagtctcgttctgtggcc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate