Basic Information
VIS ID
TVIS44029218
Fusion event
HTLV-1-ASIC2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
NCBI36/hg18
Start
28814748/33463617 (Hg38)
End
28814748/33463617 (Hg38)
Orient
+
Location type
Intronic
Target gene
ASIC2
Nearest miRNA
hsa-mir-1180/Upstream/1113415; hsa-mir-10226/Downstream/3570128;
Nearest TSS
ENST00000595228/Upstream/170629; ENST00000585093/Downstream/70493;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/170170, chr17-CpG: 46/Downstream/576307
Upstream sequence
TTGGCTGTGTCTCCCCCAGAATATATCTACAGGCAATGGGGCAGGTAAGGTAGCATCTCCAGGGGATTCCCTACTCCATGCAATCTGCCTGCGTGAGCCC
Downstream sequence
CAGCCCTTATGGACCAAAAAGGAAACAACTGCGGGAGTCATGGGAAATCATCTGTGGAACTAGATAGACTCTCAGACTCCTGCCCTCCTATGATTAGTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate