Basic Information
VIS ID
TVIS44029228
Fusion event
HTLV-1-JHY integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
122315694/122939776 (Hg38)
End
122315694/122939776 (Hg38)
Orient
-
Location type
Intronic
Target gene
JHY
miRNAs that regulate target gene
hsa-mir-10a-5p
Nearest miRNA
hsa-let-7a-2/Upstream/787468; hsa-mir-3167/Downstream/441664;
Nearest TSS
ENST00000527297/Upstream/4736; ENST00000531681/Downstream/41944;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/56533, chr11-CpG: 86/Downstream/37010
Upstream sequence
gggaaaatatctacaataaacacctgtagtccttcatctagattcatcagtgctaaaattttgcaacattttctatctatttactgaatcatttgaaagc
Downstream sequence
aagttcagaatcacaatattttatctctaaatatttcaacattcagcccctaagaataaggacattgtcttatacaacaatcacaccattatcacagcta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate