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TVIS44029231
Basic Information
VIS ID
TVIS44029231
Fusion event
HTLV-1-PTPRJ integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
47990554/48012426 (Hg38)
End
47990554/48012426 (Hg38)
Orient
-
Location type
Intronic
Target gene
PTPRJ
miRNAs that regulate target gene
hsa-mir-155-5p
;
hsa-mir-328-3p
;
hsa-mir-335-5p
;
hsa-mir-124-3p
;
hsa-mir-26b-5p
;
hsa-mir-16-5p
;
hsa-mir-31-5p
;
hsa-mir-32-5p
;
hsa-mir-92a-3p
;
hsa-mir-205-5p
;
hsa-mir-92b-3p
;
hsa-mir-15a-5p
;
hsa-mir-15b-5p
;
hsa-mir-195-5p
;
hsa-mir-548c-3p
;
hsa-mir-1277-5p
;
hsa-mir-592
;
hsa-mir-376a-5p
;
hsa-mir-4672
;
hsa-mir-597-5p
;
hsa-mir-376a-2-5p
;
hsa-mir-190b
;
hsa-mir-190a-5p
;
hsa-mir-936
;
hsa-mir-511-3p
;
hsa-mir-5011-5p
;
hsa-mir-6768-5p
;
hsa-mir-4789-5p
;
hsa-mir-3591-5p
;
hsa-mir-190a-3p
;
hsa-mir-142-3p
;
hsa-mir-27b-5p
;
hsa-mir-4280
;
hsa-mir-6516-3p
;
hsa-mir-627-3p
;
hsa-mir-3149
;
hsa-mir-1303
;
hsa-mir-5007-5p
;
hsa-mir-505-3p
;
hsa-mir-2278
;
hsa-mir-27a-5p
;
hsa-mir-28-5p
;
hsa-mir-299-3p
;
hsa-mir-3139
;
hsa-mir-3158-3p
;
hsa-mir-34a-5p
;
hsa-mir-34c-5p
;
hsa-mir-3688-5p
;
hsa-mir-4265
;
hsa-mir-4266
;
hsa-mir-4296
;
hsa-mir-4322
;
hsa-mir-4417
;
hsa-mir-449a
;
hsa-mir-449b-5p
;
hsa-mir-548au-3p
;
hsa-mir-6132
;
hsa-mir-6501-3p
;
hsa-mir-6510-5p
;
hsa-mir-6721-5p
;
hsa-mir-6836-5p
;
hsa-mir-708-5p
;
hsa-mir-7106-3p
;
hsa-mir-891a-3p
Nearest miRNA
hsa-mir-129-2/Upstream/611384; hsa-let-7a-2/Downstream/84356;
Nearest TSS
ENST00000527297/Upstream/31699;
ENST00000526550/Downstream/3429;
Nearest CpG islands
None/Target,
chr11-CpG: 30/Upstream/30808
,
chr11-CpG: 17/Downstream/867719
Nearest cancer related gene
PTPRJ
(TSG, No orient, 0)
Upstream sequence
GGCCTTGTCAGAAGGTCTTATACCATATTCCAGTCACCCAAAGTGCTGCCCGCCATGCCTGttcgttcagcaggatttccctgagcacctgctctgtgcc
Downstream sequence
aagccctatgctaagcaccaagggagtaaatatggagggcagtgtccccagagtccaggaactcgtgatctagtcggggagGAGAGGGGTACCTACTCTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co6
Sample type
Nontumor
Age
54
Gender
Female
CpG Island Information
×
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