Basic Information
VIS ID
TVIS44029231
Fusion event
HTLV-1-PTPRJ integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
End
47990554/48012426 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-129-2/Upstream/611384; hsa-let-7a-2/Downstream/84356;
Nearest cancer related gene
PTPRJ(TSG, No orient, 0)
Upstream sequence
GGCCTTGTCAGAAGGTCTTATACCATATTCCAGTCACCCAAAGTGCTGCCCGCCATGCCTGttcgttcagcaggatttccctgagcacctgctctgtgcc
Downstream sequence
aagccctatgctaagcaccaagggagtaaatatggagggcagtgtccccagagtccaggaactcgtgatctagtcggggagGAGAGGGGTACCTACTCTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate