Basic Information
VIS ID
TVIS44029237
Fusion event
HTLV-1-LOC105378027 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
141040196/140677366 (Hg38)
End
141040196/140677366 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378027
Nearest miRNA
hsa-mir-10398/Upstream/472040; hsa-mir-1202/Downstream/6448;
Nearest TSS
ENST00000381078/Upstream/590684; ENST00000565399/Downstream/175558;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1301925, chr6-CpG: 46/Downstream/1410970
Upstream sequence
aaaatactcatcaatgttagaataaaaatatattacagtaaaatcatgttagaagatagatatgtattcatgcaatgatgtaaatgaatATTGAGAATAT
Downstream sequence
AAAAGATGAAAAAAATAAATTGTAGCAGAATATCTGTTCAAAATTTATTTCTTTACAATTCAAAACAAAGTGACATTTTGCTTAGAAGTTTGAAATTTTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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