Basic Information
VIS ID
TVIS44029258
Fusion event
HTLV-1-DIP2B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q13.12
Reference genome
NCBI36/hg18
Start
49278620/50598570 (Hg38)
End
49278620/50598570 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12A
Target gene
DIP2B
Nearest miRNA
hsa-mir-1244-3/Upstream/364358; hsa-let-7i/Downstream/2300319;
Nearest TSS
ENST00000382841/Upstream/93463; ENST00000546719/Downstream/42235;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/93189, chr12-CpG: 139/Downstream/165145
Upstream sequence
TATTATTTTACCTGGCTTTTCCACTACTTCTCACATTGCTCTAAAATGTATCCTTTTGCAACACCAAATTCCTCGTGACTGCCACTGCGTCATCTCTCTG
Downstream sequence
GTCATCTATAAATGGATGCTTTTACAAAGCAGCCTGCTCTCCTTTCTCTAATGAGAATATAAAACATCTCCTTTCCCTTTTTTATTCTTTCTTTCAGTTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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