Basic Information
VIS ID
TVIS44029261
Fusion event
HTLV-1-STX8 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
NCBI36/hg18
Start
9243201/9399159 (Hg38)
End
9243201/9399159 (Hg38)
Orient
+
Location type
Intronic
Target gene
STX8
Nearest miRNA
hsa-mir-1253/Upstream/1212155; hsa-mir-10226/Downstream/2682740;
Nearest TSS
ENST00000595228/Upstream/115985; ENST00000576477/Downstream/38730;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/158637, chr17-CpG: 26/Downstream/176531
Upstream sequence
aaaaaagctacagtaatcaagacagtacagtattcacatacggacagagaaaatgataaatggaacaggaaagggtgcagcaatagattcaggcatgtcg
Downstream sequence
ccaactgatttttCCACTATATATATATCCACATGAACCTCAGGTTCCAAAAAATCTCAGCAGGCCCATTTCTTCCATTCTCACAGCATCCCTATTTACA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate