Basic Information
VIS ID
TVIS44029268
Fusion event
HTLV-1-SMG7-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
181698187/183462429 (Hg38)
End
181698187/183462429 (Hg38)
Orient
+
Location type
Intronic
Target gene
SMG7-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/3024039; hsa-mir-1182/Downstream/9253899;
Nearest TSS
ENST00000473358/Upstream/43827; ENST00000493609/Downstream/9787;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/43900, chr1-CpG: 62/Downstream/10061
Upstream sequence
GTTGGCAGAAAATGTTGAAAAATGTATGAAATTAAAGCCAACCGTAAGTAGTCTACCTCAGAAATAGCTGCTATTAACATTTTATTATATGTATGACCAT
Downstream sequence
TTTCTATGTAATTCTATTTCATAGTTGCACTTTACATCTATAGTTTTGTATCTTTCAGGCATAATTTAGTATACTTTTAGCCATGGTTTTCCATCACTTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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