Basic Information
VIS ID
TVIS44029272
Fusion event
HTLV-1-LOC107986098 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
NCBI36/hg18
Start
73338205/73206364 (Hg38)
End
73338205/73206364 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986098
Nearest miRNA
hsa-let-7g/Upstream/1664275; hsa-mir-12124/Downstream/2008112;
Nearest TSS
ENST00000440867/Upstream/142350; ENST00000608743/Downstream/181782;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/95375, chr3-CpG: 114/Downstream/177224
Upstream sequence
GAGAGCAATAATAACGCTCCAAGAATGAAAACATCCGTCAAAGGCTGACAAACCTCTGACATAGATTTTCCTTAATGTTTCTAAAGGAGCTAGTTAAATG
Downstream sequence
TGATGGAGTTGCTAATAAAAATTATTTGGTGGTCCTAGTGAAGCAGCCCTGTATGCCCTGTTCACCTTCCTTGTTAGGCAAGCAGGGAAGCCACATTAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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