Basic Information
VIS ID
TVIS44029287
Fusion event
HTLV-1-LOC112267952 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p24.3
Reference genome
NCBI36/hg18
Start
8871453/8926221 (Hg38)
End
8871453/8926221 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC112267952
Nearest miRNA
hsa-mir-3691/Upstream/2756786; hsa-mir-10398/Downstream/1513496;
Nearest TSS
ENST00000381078/Upstream/490610; ENST00000645232/Downstream/235556;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/490313, chr6-CpG: 41/Downstream/472639
Upstream sequence
TGTTTTTAGGCCTGGCCAGAGAATACCAGGAGACTGTAAGATGTCATGGTACATCAAGTCAGTCTCAAGTGTCCTATAACCCTGGCTTGCCATCAGCTTA
Downstream sequence
GAATGTTCTCTTTTTCTACTGACCTGCCTTCCATCTGTGGTCTCTTCCTTCCGTCTGCTATTTATCATGTACTTATTGATGTGTGTCCCAGAATGTTCAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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