Basic Information
VIS ID
TVIS44029294
Fusion event
HTLV-1-DNAH11 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
NCBI36/hg18
Start
21655391/21649248 (Hg38)
End
21655391/21649248 (Hg38)
Orient
+
Location type
Intronic
Target gene
DNAH11
miRNAs that regulate target gene
hsa-mir-375
Nearest miRNA
hsa-mir-1183/Upstream/178102; hsa-mir-10399/Downstream/4300671;
Nearest TSS
ENST00000635602/Upstream/31054; ENST00000465129/Downstream/53462;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/105553, chr7-CpG: 85/Downstream/296205
Upstream sequence
ggaaaggatgtggagtaatgggaatgttcatatctagccaccagtattataagttagtacaactacttgggaaaactgtttaacagcattttctaaatag
Downstream sequence
gaatatatcatacatttttatctagcagttcaccttttcagtgtacactcagcagaaatacatagatggaccaaaagaagtatacaagaattttcatagc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate