Basic Information
VIS ID
TVIS44029312
Fusion event
HTLV-1-LOC105369526 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
NCBI36/hg18
Start
119304005/119928086 (Hg38)
End
119304005/119928086 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11B
Target gene
LOC105369526
Nearest miRNA
hsa-mir-10392/Upstream/615074; hsa-let-7a-2/Downstream/2171671;
Nearest TSS
ENST00000527297/Upstream/198503; ENST00000530303/Downstream/60748;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/186320, chr11-CpG: 49/Downstream/209252
Upstream sequence
tagtaccaatgctggaaagaataaattgctgcccctcccagcattgaaggaatctgattcagtcaacctaccacaaagtggctggctagtctcctgaagg
Downstream sequence
aacggtgccacattaaggtctctgtatgaatctctgttgctgcctgtttgcgtattcagtggtggcagctgcatgatcagtcttggtgagaaggaaccca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate