Basic Information
VIS ID
TVIS44029315
Fusion event
HTLV-1-IL12A-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q25.33
Reference genome
NCBI36/hg18
Start
161166567/159966085 (Hg38)
End
161166567/159966085 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
IL12A-AS1
Nearest miRNA
hsa-let-7g/Upstream/683351; hsa-mir-1224/Downstream/438503;
Nearest TSS
ENST00000440867/Upstream/77293; ENST00000480088/Downstream/22665;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/200851, chr3-CpG: 52/Downstream/22618
Upstream sequence
ATAAATCTTCTTTAAATTACCAATTTAATGAGCAAAAAATAAAAATGTTTAAAGTTTCAATTTTCGTTTCTCTTTGGTAATTAATGATGTTGAGTAGATT
Downstream sequence
TCCATGTCTTTACTATTTTTATTTCCTATGTTAGTTATCAATTTGTACTCTATTACATTTTCTTCTTGTCTAGTAGGACTATACTTAAACCAACATTGCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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