Basic Information
VIS ID
TVIS44029320
Fusion event
HTLV-1-LOC105373627 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
NCBI36/hg18
Start
134406985/133932944 (Hg38)
End
134406985/133932944 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373627
Nearest miRNA
hsa-mir-1285-2/Upstream/1499124; hsa-mir-10b/Downstream/194181;
Nearest TSS
ENST00000437798/Upstream/364481; ENST00000488365/Downstream/187039;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/666049, chr2-CpG: 22/Downstream/76850
Upstream sequence
gttctgttccactggtctttttatctattgttatgcaaacttcaatctctcttaatttcaatagctttgtgatatgtctcaatatctgagagtgtaagtc
Downstream sequence
ctcaaaataatctttctttttataaataatctccttgactatgttttgccgtttgcattcttatatgaattttagaatcagcttgtcaatttctacacaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate