Basic Information
VIS ID
TVIS44029323
Fusion event
HTLV-1-COL21A1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
56215868/56243111 (Hg38)
End
56215868/56243111 (Hg38)
Orient
-
Location type
Intronic
Target gene
COL21A1
miRNAs that regulate target gene
hsa-mir-29c-3p ; hsa-mir-335-5p
Nearest miRNA
hsa-mir-10398/Upstream/2966040; hsa-mir-10524/Downstream/1147021;
Nearest TSS
ENST00000381078/Upstream/76174; ENST00000426453/Downstream/4324;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/663817, chr6-CpG: 19/Downstream/4279
Upstream sequence
tatccagtgccaccactaactcttcatgagcccttggctaagaatgacatctccaaacctgttccctcatttatattacgcaaattctaatatccctaac
Downstream sequence
cattctaaaaattctatgagtacatgaGAATCCCATGAATATAGTGTGTAGATATGTTCCAGGGACTCTCTTTATAAATGACATGATTACTTTACTCTTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate