Basic Information
VIS ID
TVIS44029326
Fusion event
HTLV-1-HGSNAT integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
NCBI36/hg18
Start
43125609/43151309 (Hg38)
End
43125609/43151309 (Hg38)
Orient
+
Location type
Intronic
Target gene
HGSNAT
miRNAs that regulate target gene
hsa-mir-615-3p
Nearest miRNA
hsa-mir-124-1/Upstream/255034; hsa-mir-10400/Downstream/18563479;
Nearest TSS
ENST00000518652/Upstream/10805; ENST00000519000/Downstream/21009;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/9861, chr8-CpG: 95/Downstream/95037
Upstream sequence
GGTGAACTGAGCTGAATAATGTCAGGGAGTGAGgtggttaagagcttggattctgcagtccaagtgtctggtttgaatcccacctctgtcacttgtgtta
Downstream sequence
ctttgggtatggttctcaccttctctctgcttctcttcccctgtgaagctggaaaaataacggaacctgccGCTGAGCTCCTTGGGAGTGTTTCGTGACT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate