Basic Information
VIS ID
TVIS44029333
Fusion event
HTLV-1-LOC105372680 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
54152767/56144304 (Hg38)
End
54152767/56144304 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372680
Nearest miRNA
hsa-mir-103a-2/Upstream/2075819; hsa-mir-1-1/Downstream/1177198;
Nearest TSS
ENST00000382410/Upstream/138832; ENST00000243911/Downstream/104428;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/138682, chr20-CpG: 22/Downstream/104952
Upstream sequence
CAGTTAGACAGGAAGCCAATTCAACAACTCTTCCAAAATCTAGGGATTCAACATTAAAATCTCCACTAACAAACTAGTGCTAGTATTAAAaatcataaca
Downstream sequence
ataacatttgtattgctcaccatagtcaaagctttgtgctgagtgatatatatgcataatcatatttgactattataaccttataaagtaagagctctta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate