VISDB Viral Integration Site DataBase

VIS ID

TVIS44029335

Fusion event

HTLV-1-BTBD3 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr20

Cytoband

p12.2

Reference genome

Start

End

11852094/11923446 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-181c-5p ; hsa-mir-148b-3p ; hsa-mir-130b-3p ; hsa-mir-181a-5p ; hsa-mir-148a-3p ; hsa-mir-98-5p ; hsa-mir-24-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-1227-3p ; hsa-mir-125b-5p ; hsa-mir-26a-5p ; hsa-mir-130a-3p ; hsa-mir-152-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-3668 ; hsa-mir-5000-5p ; hsa-mir-5680 ; hsa-mir-6502-3p ; hsa-mir-3613-3p ; hsa-mir-374a-5p ; hsa-mir-331-5p ; hsa-mir-374b-5p ; hsa-mir-3163 ; hsa-mir-3662 ; hsa-mir-6509-5p ; hsa-mir-3924 ; hsa-mir-185-5p ; hsa-mir-1253 ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-5197-3p ; hsa-mir-944 ; hsa-mir-3674 ; hsa-mir-770-5p ; hsa-mir-663b ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-5582-5p ; hsa-mir-6082 ; hsa-mir-598-3p ; hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-6499-3p ; hsa-mir-668-3p ; hsa-mir-483-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-4678 ; hsa-mir-491-5p ; hsa-mir-4450 ; hsa-mir-3119 ; hsa-mir-5192 ; hsa-mir-194-3p ; hsa-mir-1296-3p ; hsa-mir-4276 ; hsa-mir-3684 ; hsa-mir-7852-3p ; hsa-mir-4699-3p ; hsa-mir-4762-5p ; hsa-mir-32-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3121-5p ; hsa-mir-4667-3p ; hsa-mir-1470

Nearest miRNA

hsa-mir-103a-2/Upstream/1273751; hsa-mir-1-1/Downstream/6547169;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/31887, chr20-CpG: 217/Downstream/1296577

Upstream sequence

GTGGTTCTGCAGAATACAGTGCCAAGATTGAACTTAAGCGGCAGGGCGTTGTCCTGGGGCAGAACTTGAGCAAGTACTTCTCAGATGGGTCCAGCAATAC

Downstream sequence

CTTTCCCGTATGGTTTGAATACCCAGTGCAGATCGAGCCAGACACCTTCTACACAGCCAGTGTGATACTGGATGGCAATGAACTCAGCTACTTTGGACAA