Basic Information
VIS ID
TVIS44029339
Fusion event
HTLV-1-CPEB1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
NCBI36/hg18
Start
81068352/82602548 (Hg38)
End
81068352/82602548 (Hg38)
Orient
-
Location type
Intronic
Target gene
CPEB1
miRNAs that regulate target gene
hsa-mir-101-3p ; hsa-let-7b-5p ; hsa-mir-25-3p ; hsa-mir-107
Nearest miRNA
hsa-mir-10393/Upstream/1605075; hsa-mir-11181/Downstream/464787;
Nearest TSS
ENST00000557528/Upstream/29337; ENST00000618020/Downstream/25604;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/61635, chr15-CpG: 214/Downstream/43817
Upstream sequence
tcagatgggaggatcacttgagcccaggagtttgaggttacagtaaggtatgattgtgccactaccttagtgacagggcaagatcctgcatccagaaaTA
Downstream sequence
TATGTATATAAAATCggccgggcgcggtggctcacacctctaatcccagcactttgggaggccgaggcgaatggatcacttgaggtcaggagtttgagac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate