Basic Information
VIS ID
TVIS44029346
Fusion event
HTLV-1-CYP2C18 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
NCBI36/hg18
Start
96442681/94692934 (Hg38)
End
96442681/94692934 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
CYP2C18
Nearest miRNA
hsa-mir-107/Upstream/5100107; hsa-mir-1287/Downstream/1371381;
Nearest TSS
ENST00000439456/Upstream/4780; ENST00000480405/Downstream/69747;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/146798, chr10-CpG: 63/Downstream/490504
Upstream sequence
gcagccataaaaaatgatgagttcatgtcctttgtaaggacatgaatgaagctggaaaccatcattctgagcaaactatcgcaagaccaaacatcacatg
Downstream sequence
ttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccagggcctgttgtggggtgggggaaggggggagg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate