VISDB Viral Integration Site DataBase

VIS ID

TVIS44029347

Fusion event

HTLV-1-TBL1XR1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr3

Cytoband

q26.32

Reference genome

Start

End

178316862/177116380 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-122-5p ; hsa-mir-21-5p ; hsa-mir-30c-5p ; hsa-mir-548c-3p ; hsa-mir-5691 ; hsa-mir-6805-3p ; hsa-mir-4433b-5p ; hsa-mir-4427 ; hsa-mir-506-5p ; hsa-mir-3613-3p ; hsa-mir-5003-5p ; hsa-mir-4668-5p ; hsa-mir-625-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-3148 ; hsa-mir-6770-5p ; hsa-mir-3179 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-3154 ; hsa-mir-4314 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-505-5p ; hsa-mir-3194-3p ; hsa-mir-767-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-1277-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-511-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6509-3p ; hsa-mir-4711-3p ; hsa-mir-6830-3p ; hsa-mir-627-3p ; hsa-mir-4742-3p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-181c-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-550b-2-5p ; hsa-mir-4684-5p ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-942-5p ; hsa-mir-554 ; hsa-mir-5088-3p ; hsa-mir-5579-5p ; hsa-mir-382-5p ; hsa-mir-7150 ; hsa-mir-4433a-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-6834-3p ; hsa-mir-186-3p ; hsa-mir-4448 ; hsa-mir-7110-3p ; hsa-mir-6758-3p ; hsa-mir-7705 ; hsa-mir-1278 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p

Nearest miRNA

hsa-let-7g/Upstream/601229; hsa-mir-1224/Downstream/6770420;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/2674822, chr3-CpG: 133/Downstream/80069

Upstream sequence

tcgtatttcctaccttggtggatggcgccactttcacccaacttgtcacccaaactagagatatggctccttctcctccctCATTTCCTGTAAGTAAGCA

Downstream sequence

CTAAGCACCATGACCTTCTATTTCTAGGATGCAACTTGACATGTGTATGTTTTTAGTTTCCCAAACTCCTCTTACATTAGCAGACTTTGGAAATGCTGTA